As part of the ENGAGE project, benchmarking of tools for sequence analysis is performed. The benchmarking reports below have been produced and are available for download.
ENGAGE Benchmarking of de novo assembly tools: SPAdes 3.9 vs Velvet 1.2
ENGAGE Benchmarking of genotypic Salmonella serotype prediction (general)
ENGAGE Benchmarking of genotypic Salmonella serotype prediction complying to the Draft International Standard ISO 16140-6 (ISO/DIS 16140-6:2017 Microbiology of the food chain – Method validation – Part 6: Protocol for the validation of alternative (proprietary) methods for microbiological confirmation and typing procedures)
ENGAGE Benchmarking of genotypic detection of antimicrobial resistance (AMR) genes
ENGAGE Benchmarking for Salmonella Enteritidis phylogeny
ENGAGE Benchmarking for Campylobacter coli phylogeny